李启寨
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Publications

Peer-Reviewed Journal paper

*denotes corresponding author for non-first author

MS

1.       Zhang W, Liu A, Tang LL, Li Q (2018) A cluster-adjusted rank-based test for a clinical trial concerning multiple endpoints with application to dietary intervention assessment.

Biometrics (Revised)

2.       Xue Y, Wang J, Ding J, Zhang SG, Li Q* (2018) A Powerful Test for Ordinal Trait Genetic Association Analysis.

Statistical Applications in Genetics and Molecular Biology (Revised)

3.       Liang F, Jia B, Xue J, Li Q, Luo Y (2018) An imputation-consistency algorithm for high-dimensional missing data problems and beyond.

Journal of the Royal Statistical Society: Series B (Statistical Methodology)  (Accepted)

4.       Liang F, Li Q, Zhou, L (2018) Bayesian Neural Networks for Selection of drug sensitive Genes.

Journal of the American Statistical Association  (Accepted)

5.       Hu JY, Zhang W, Li XM, Pan DD, Li Q (2017) Efficient estimation of disease odds ratios for the follow-up genetic association studies.

Statistical Methods in Medical Research (Accepted)

6.       Xiong WJ, Ding J, He YZ, Li Q (2017) Improved Matrix Pooling.

Statistical Methods in Medical Research (Accepted)

7.       Li JL, Zhang W, Zhang SG, Li Q* (2018) A theoretic study of distance-based regression model.

Science in China Series A-Mathematics (Accepted)

8.       Zhang SH, Zhang SG, Li Q* (2018) Group Hotelling's T2 test for comparing multiple endpoints.

应用概率统计 (Accepted)

2018

9.       Wu J, Wei Y, Li Q, Yuan F (2018) Economic transition and changing location of manufacturing industry in China: a study of the Yangtze river delta.

Sustaninability 10:2624.

10.    Li P, Zhao J, Kothapalli KSD, Li X, Li H, Han Y, Mi S, Zhao W, Li Q, Zhang H, Song Y, Brenna JT, Gao Y (2018) A regulatory insertion-deletion polymorphism in the FADS gene cluster influences PUFA and lipid profiles among Chinese adults: a population-based study.

The American Journal of Clinical Nutrition 107(6):867-875.

11.    Zheng G, Xiong JH, Li Q, Xu, J, Yuan A, Gastwirth JL. (2018). Evaluating the accuracy of small p-values in genetic association studies using Edgeworth expansions.

Scandinavian Journal of Statistics 45: 1-33.

2017

12.    Li Q, Liu A, Xiong W (2017) D-optimality of group testing for joint prevalence estimation of correlated rare diseases in the presence of misclassification.

Statistica Sinica 27:823-838.

13.    Zhang W, Yang L, Tang LL, Liu A, Mills JL, Sun YC, Li Q* (2017) GATE: an efficient procedure in study of pleiotropic genetic associations.

BMC Genomics 18(1):552.

14.    Wang L, Liu H, Liu L, Wang Q, Li S, Li Q (2017) Prediction of peanut protein solubility based on the evaluation model established by supervised principal component regress.

Food Chemistry 218:553-560.

15.    Zhu JY, Zhang W, Li Q, Li ZB. (2017) Testing association between mixed type outcomes and covariates jointly by the use of a latent variable.

Scientific Reports 7(1):8006.

16.    Huang T, Li Q, Yin Y, Wang J, Sun S, Yang F, Li L, Wang J, Wang Q, Li Y (2017) Composition of intestinal microflora associated with Yang-deficiency.

Journal of Traditional Chinese Medical Sciences 4:254-260.

17.    Hu XN, Duan XG, Pan DD, Zhang SG, Li Q (2017) A model-embedded trend test with incorporating Hary-Weinberg equilibrium information.

Journal of Systems Science & Complexity 30: 101–110.

2016

18.    Hu XN, Zhang W, Zhang SG, Ma SS, Li Q* (2016) Group-combined p-values with applications to genetic association studies.

Bioinformatics 32(18):2737-2743.

19.    Zhang W, Li Q* (2015) Incorporating Hardy-Weinberg equilibrium law to enhance the association strength for ordinal trait genetic study.

Annals of Human Genetics 80(2):102-112.

20.    Zhang W, Li HY, Li Z, Li Q (2015) A two-phase procedure for non-normal quantitative trait genetic association study.

BMC Bioinformatics 17(1):52.

21.    Lei Y, Li J, Wang N, Yang X, Hamada Y, Li Q, Zheng WF, Jiang XY. (2016) An on-chip model for investigating the interaction between neurons and cancer cells.

Integrative Biology 8(3):359-367.

22.    Li ZB, Zhang W, Pan DD, Li Q (2016) Power calculation of multi-step combined principal components with applications to genetic association studies. 

Scientific Reports 6:26243.

23.    Zheng G, Zhang W, Xu J, Yuan A, Li Q, Gastwirth JL (2016) Genetic risks and genetic model specification.

Journal of Theoretic Biology 403:68-74.

24.    Zang YG, Zhang SG, Zhang QZ, Li Q (2016) Jackknife empirical likelihood test for high-dimensional regression coefficients.

Computational Statistics and Data Analysis 94:302-316.

25.    Tang LL, Zhang W, Li Q, Ye X, Chan L. (2016) Parametric and semi-parametric least square regression methods for clustered ROC Data.

Biometrical Journal 58,747-765.

26.    Yuan A, Li Q, Xiong M, Tan MT (2016) Adaptive design for staggered-start clinical trial.

The International Journal of Biostatistics 12(2):20150011.

27.    Pan DD, Li ZB, Li Q, Fung WK (2015) A novel powerful joint analysis with data fusion in two-stage case-control genome-wide association studies.

Communications in Statistics-Simulation and Computation 45(7):2362-2376.

28.    熊文俊,丁娟,李启寨 (2016) 分组检测方法综述.

数理统计与管理  5 , 838-855

2015

29.    Zheng G, Zhang W, Li Q*,Xu J, Yuan A, Gastwirth JL (2015) Analysis of genetic association studies incorporating prior information of genetic models.

Journal of Agricultural, Biological, and Environmental Statistics 20(2):173-191.

30.    Zhang W, Li Q* (2014) Nonparametric risk and nonparametric odds in quantitative genetic association Studies.

Scientific Reports 5:12105.

31.    Zhang W, Zhang ZH Li XM, Li Q* (2015) Fitting proportional odds model to case-control data with incorporating Hardy-Weinberg equilibrium.

Scientific Reports 5:17286.

32.    熊景宏,李启寨* (2015) 混合卡方随机变量和的近似分布的一个注记.

系统科学与数学 35(12):1446-1456.

33.    钞婷,李启寨*,刘卓军,孙才,孙云刚 (2015) 基于广义和校准马氏距离诊断IP 地址威胁程度.

中国科学院大学学报32(1):18-24.

2014

34.    Chen W, Li Q, Zheng W, Hu F, Zhang G, Wang Z, Zhang D, Jiang X (2014) Identification of Bacteria in Water by a Fluorescent Array.

Angewandte Chemie-International Edition 53:13734-13739. (并列第一作者)

35.    Li Q, Hu J, Ding J, Zheng G (2014) Fisher's method of combining dependent statistics using generalizations of the gamma distribution: with applications to genetic pleiotropic associations.

Biostatistics 15(2):284-295.

36.    Li Q, Xiong W, Chen J, Zheng G, Li Z, Mills JL, Liu A (2014) A robust test for quantitative trait analysis with model uncertainty in genetic association studies.

Statistics and Its Interface 7:61-68.

37.    Zheng G, Li Q*, Yuan A (2014) Some statistical properties of robust tests for genetic studies.

Scandinavian Journal of Statistics 41:762-774.

38.    Li ZB, Yuan A, Han G, Gao G, Li Q* (2014) Rank-based tests for identifying multiple genetic variants associated with quantitative traits.

Annals of Human Genetics 78:306-310.

39.    Li ZB, Liu A, Li Z, Li Q* (2014) Rank-based tests for comparison of multiple endpoints among several populations.

Statistics and Its Interface 7:9-18.

40.    Wang L, Meng J, Cao W, Li Q, Qiu Y, Sun B, Li LM. (2014) Induction of apoptosis through ER stress and TP53 in MCF-7 cells by the nanoparticle [Gd@C82(OH)22]n: A systems biology study.

Methods 67:394-406.

41.    Yuan A, Li Q, Qin J, Zheng G (2014) Estimation of genetic effects incorporating prior information.

Statistics and Its Interface 7:43-50.

42.    Li ZB, Li Q, Han CP, Li B (2014) A hybrid approach for regression analysis with block missing data.

Computational Statistics and Data Analysis 75:239-247.

43.    Wang L, Liu H, Liu L, Wang Q, Li Q, Du Y, Zhang J (2014) Protein contents in different peanut varieties and their relationship to gel property.

International Journal of Food Properties 17:1560-1576.

44.    Yuan A, Qin G, He W,Li Q (2014) On coalescence analysis using genealogy rooted trees.

Computational and Mathematical Methods in Medicine Volume 2014, Article ID 194202.

45.    潘东东,李正帮,张维,李启寨* (2014) 全基因组关联分析综述.

应用概率统计30(1):84-103.

2013

46.    Li Q, Li ZB, Zheng G, Gao G, Yu K (2013) Rank-based robust tests for quantitative-trait genetic association Studies.

Genetic Epidemiology 37(4):358-365.

47.    Li ZB, Cao F, Zhang J,Li Q* (2013) Summation of absolute value test for multiple outcome comparison with moderate effect.

Journal of Systems Science & Complexity 26:462-469.

48.    Yan T, Li Q, Li Y, Li Z, Zheng G (2013) Genetic association with multiple traits in the presence of population stratification.

Genetic Epidemiology 37(6):571-580.

49.    Chen W, Chen X, Archer KJ, Liu N, Li Q, Zhao Z, Sun S, Gao G (2013) A rapid association test procedure robust under different genetic models accounting for population stratification.

Human Heredity 75(1):23-33.

50.    Li J, Liu J, Zhao L, Ma Y, Jia M, Lu T, Ruan Y, Li Q, Yue W, Zhang D, Wang L (2013) Association study between genes in Reelin signaling pathway and autism identifies DAB1 as a susceptibility gene in a Chinese Han population.

Progress in Neuro-Psychopharmacology & Biological Psychiatry 44C:226-232.

51.    Han G, Huang Y, Li Q, Chen L,Zhang X (2013) Hybrid bayesian inference on HIV viral dynamic models.

Journal of Applied Statistics 40(11):2516-2532.

52.    Yuan A, Li Q(2013) Convolution representation in practice.

Journal of Statistics: Advances in Theory and Application 9(2):105-133.

2012

53.    Li Q, Pan D, Yue W, Gao Y, Yu K (2012) Evaluating rare variants under two-stage design.

Journal of Human Genetics 57(6):352-357.

54.    Wang L, Li Q, Li Z, Zheng G (2012) Bayes factor based on a maximum statistic for case-control genetic association studies.

Journal of Agricultural, Biological, and Environmental Statistics 17:568-582.

55.    Safaeian M, Hildersheim A, Gonzalez P, Yu K, Porras C, Li Q, Rodriguez AC, Sherman ME, Schiffman M, Wacholder S, Burk R, Herrero R, Burdete L, Chanock S, Wang S (2012) Single nucleotide polymorphisms in the PRDX3 and RPS19 and risk of HPV persistence and cervical precancer/cancer.

PLoS One 7(4):e33619.

56.    Guo G, Kang G, Wang J, Qin H, Jiang B,Li Q, Chen W, Liu N, Allison DB. (2012) A sequential Bonferroni procedure using smoothed weights for genome-wide association studies incorporating information on Hardy-Weinberg disequilibrium among cases.

Human Heredity 73:1-13.

57.    Meyer TE, Chu LW, Li Q, Yu K, Rosenberg PS, Menashe I, Chokkalingam AP, Quraishi SM, Huang WY, Weiss JM, Kaaks R, Hayes RB, Chanock SJ, Hsing AW (2012) The association between inflammation-related genes and serum androgen levels in men: The prostate, lung, colorectal, and ovarian study.

Prostate 72(1):65-71.

58.    Gao Y, Killian K, Zhang H, Li Q, Weinstein S, Virtamo J, Tucker M, Taylor P, Albanes D, Meltzer P, Caporaso N (2012) Leukocyte DNA methylation and colorectal cancer among male smokers.

World journal of gastrointestinal oncology 4(8):193-201.

2011

59.    Li Q (2011) An MSE-reduced estimator for the response proportion in a two-stage clinical trial.

Pharmaceutical Statistics 10(3):277-279.

60.    Li Q, Zheng G, Tiwari R (2011) Analysis of ordered categorical data with score averaging: with applications to case-control genetic associations.

Journal of Applied Statistics 38(9):1833-1843.

61.    Pan D, Li Q*, Jiang N, Liu A, Yu K (2011) Robust joint analysis allowing for model uncertainty in two-stage genetic association studies.

BMC Bioinformatics 12:9.

62.    Yue WH, Wang HF, Sun LD, Tang FL, Liu ZH, Zhang HX, Li WQ, Zhang YL, Zhang Y,  Ma CC, Du B, Wang LF, Ren YQ, Yang YF, Hu XF, Wang Y, Deng W, Tan LW, Tan YL, Chen Q, Xu GM, Yang GG, Zuo XB, Yan H, Ruan YY, Lu TL, Han X, Ma XH, Wang Y, Cai LW, Jin C, Zhang HY, Yan J, Mi WF, Yin XY, Ma WB, Liu Q, Kang L, Sun W, Pan CY, Shuang M, Yang FD, Wang CY, Yang JL, Li KQ, Ma X, Li LJ, Yu X, Li Q, Huang X, Lv LX, Li T, Zhao GP, Huang W, Zhang XJ, Zhang D (2011) Genome-wide association study identifies a susceptibility locus for schizophrenia in Han Chinese at 11p11.2.

Nature Genetics 43(12):1228-1284.

63.    Wang LL, Li Q, Li Z, Zheng G (2011) Bayes factors in the presence of population stratification.

Statistics & Probability Letters 81(7):836-841.

2010

64.    Li Q, Zhang H, Yu K (2010) Approaches for evaluating rare polymorphisms in genetic association studies.

Human Heredity 69(4):219-228.

65.    Li Q, Li G, Xiong S (2010) Assessment of cell number for a multinomial distribution with application to genomic data.

Metrika 71(2): 151-164.

66.    Li Q, Zheng G, Liu AY, Xiong SF, Li Z, Yu K (2010) The limiting bound of Efron's W-formula for hypothesis testing when a nuisance parameter is present only under the alternative.

Journal of Statistical Planning and Inference 140(6):1610-1617.

67.    Li Q, Zheng G, Liu AY, Li Z, Yu K (2010) Approximating probabilities of correlated events.

Science in China Series A-Mathematics 53(11):2937-2948.

68.    Liu AY, Li Q, Liu CL, Yu K, Yu KF (2010) A rank-based test for comparison of multidimensional outcomes.

Journal of the American Statistical Association 105(490):578-587.

69.    Yu K, Wheeler W, Li Q, Bergen AW, Caporaso N, Chatterjee N, Chen JB (2010) A partially linear tree-based regression model for multivariate outcomes.

Biometrics 66(1):89-96.

70.    Liu AY, Liu CL, Li Q, Yu KF, Yuan VW (2010) A threshold sample-enrichment approach in a clinical trial with heterogeneous subpopulations.

Clinical Trials 7(5):537-545.

71.    Koutros S, Freeman LEB, Berndt SI,Andreotti G, Lubin JH, Sandler DP, Hoppin JA, Yu K, Li Q, Burdette LA , Yuenger J, Yeager M, Alavanja MCR (2010) Pesticide use modifies the association between genetic variants on chromosome 8q24 and prostate cancer.

Cancer Research 70(22):9224-9233.

72.    Ahn J, Yu K, Stolzenberg-Solomon R,Simon KC, McCullough ML, Gallicchio L, Jacobs EJ, Ascherio A, Helzlsouer K, Jacobs KB, Li Q, Weinstein SJ, Purdue M, Virtamo J, Horst R, Wheeler W, Chanock S, Hunter DJ, Hayes RB, Kraft P, Albanes D (2010) Genome-wide association study of circulating vitamin D levels.

Human Molecular Genetics 19(13):2739-2745.

73.    Shebl FM , Andreotti G, Rashid A, Gao YT, Yu K, Shen MC, Wang BS,Li Q, Han TQ, Zhang BH, Fraumeni Jr JF, Hsing AW (2010) Diabetes in relation to biliary tract cancer and stones: a population-based study in Shanghai, China.

British Journal of Cancer 10:115-119.

74.    Yang HP, Bosquet JG, Li Q, Platz EA, Brinton LA, Sherman ME, Lacey JV, Gaudet MM, Burdette LA, Figueroa JD, Ciampa JG, Lissowska J, Peplonska B, Chanock SJ, Garcia-Closas M (2010) Common genetic variation in the sex hormone metabolic pathway and endometrial cancer risk: pathway-based evaluation of candidate genes.

Carcinogenesis 31(5):827-833.

75.    Chu LW, Meyer TE,Li Q, Menashe I, Yu K, Rosenberg PS, Huang WY, Quraishi SM, Kaaks R, Weiss JM, Hayes RB, Chanock SJ, Hsing AW (2010) Association between genetic variants in the 8q24 cancer risk regions and circulating levels of androgens and sex hormone-binding globulin.

Cancer Epidemiology Biomarkers & Prevention 19(7):1848-1854.

76.    Meyer TE, O'Brien TG, Andreotti G, Yu K, Li Q, Gao YT, Rashid A, Shen MC, Wang BS, Han TQ, Zhang BH, Niwa S, Fraumeni JF , Hsing AW (2010) Androgen receptor CAG repeat length and risk of biliary tract cancer and stones.

Cancer Epidemiology Biomarkers & Prevention 19(3):787-793.

77.    Wang SS, Gonzalez P, Yu K, Porras C,Li Q, Safaeian M, Rodriguez AC, Sherman ME, Bratti C,Schiffman M, Wacholder S, Burk RD, Herrero R, Chanock SJ, Hildesheim A (2010) Common genetic variants and risk for HPV persistence and progression to cervical cancer.

PLoS One 5(1):e8667.

2009

78.    Li Q, Wacholder S, Hunter DJ, Hoover RN, Chanock S, Thomas G, Yu K (2009) Genetic background comparison using distance-based regression, with applications in population stratification evaluation and adjustment.

Genetic Epidemiology 33(5):432-441.

79.    Li Q, Yu K (2009) Inference of non-centrality parameter of a truncated non-central chi-squared distribution.

Journal of Statistical Planning and Inference 139(7):2431-2444.

80.    Li Q, Zheng G, Liang XY, Yu K (2009) Robust tests for single-marker analysis in case-control genetic association studies.

Annals of Human Genetics 73,245-252.

81.    Li Q, Liu AY, Yu K, Yu KF (2009) A weighted rank-sum procedure for comparing samples with multiple endpoints.

Statistics and Its Interface 2(2):197-201.

82.    Li Q, Zhang JJ, Dai S (2009) On estimating the non-centrality parameter of a chi-squared distribution.

Statistics & Probabilities Letters 79(1):98-104.

83.    Landi MT, Chatterjee N, Yu K, Goldin LR, Goldstein AM, Rotunno M, Mirabello L, Jacobs K, Wheeler W, Yeager M, Bergen AW, Li Q, Consonni D, Pesatori AC, Wacholder S, Thun M, Diver R, Oken M, Virtamo J, Albanes D, Wang ZM, Burdette L, Doheny KF, Pugh EW, Laurie C, Brennan P, Hung R, Gaborieau V, McKay JD, Lathrop M, McLaughlin J, Wang Y, Tsao MS, Spitz MR, Wang YF, Krokan H, Vatten L, Skorpen F, Arnesen E, Benhamou S, Bouchard C, Metsapalu A, Vooder T, Nelis M, Valk K, Field JK, Chen C, Goodman G, Sulem P, Thorleifsson G, Rafnar T, Eisen T, Sauter W, Rosenberger A, Bickeboller H, Risch A, Chang-Claude J, Wichmann HE, Stefansson K, Houlston R, Amos CI, Fraumeni JF, Savage SA, Bertazzi PA, Tucker MA, Chanock S, Caporaso NE (2009) A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma.

The American Journal of Human Genetics 85(5):679-691.

84.    Yu K, Li Q, Bergen AW, Pfeiffer RM, Rosenberg PS, Caporaso N, Kraft P, Chatterjee N (2009) Pathway analysis by adaptive combination of p-values.

Genetic Epidemiology 33(8):700-709.

85.    Mendelsohn JB, Li Q, Ji BT, Shu XO, Yang G, Li HL, Lee KM, Yu K, Rothman N, Gao YT, ZhengW, Chow WH (2009) Personal use prospective cohort of Chinese women.

Cancer Science 100(6):1088-1091.

86.    Liang X, Gao Y, Lam TK, Li Q, Falk C, Yang XR, Goldstein AM, Goldin LR (2009) Identifying rheumatoid arthritis susceptibility genes using high-dimensional methods.

BMC proceedings 3 Suppl 7:S79.

87.    戴帅,李启寨, 陈艳艳. (2009) 基于单元重要度的公交网络优化.

北京工业大学学报 : 35: 3: 350-353.

2008

88.    Li Q, Yu K (2008) Improved correction for population stratification in genome-wide association studies by identifying hidden population structures.

Genetic Epidemiology 32(3):215-226.

89.    Li Q, Zheng G, Li Z, Yu K (2008) Efficient approximation of P-value of the maximum of correlated tests, with applications to genome-wide association studies.

Annals of Human Genetics 72:397-406.

90.    Li Q, Yu K,Li Z, Zheng G (2008) MAX-rank: a simple and robust genome-wide scan for case-control association studies.

Human Genetics 123(6):617-623.

91.    Yu K, Wang ZM, Li Q, Wacholder S, Hunter DJ, Hoover RN, Chanock S, Thomas G (2008) Population substructure and control selection in genome-wide association studies.

PLoS One 3(7):e2551.

2007

92.    Yu K, Chatterjee N, Wheeler W, Li Q, Wang S, Rothman N, Wacholder S (2007) Flexible design for following up positive findings.

The American Journal of Human Genetics81(3):540-551.

93.    Liu HY, Lang JH , Zhou QF, Shan D, Li Q (2007) Detection of endometriosis with the use of plasma protein profiling by surf ace-enhanced laser desorption/ionization time-of-flight mass spectrometry.

Fertility and Sterility 87(4):988-990.

2006

94.    Zhao H, Li Q, Li J, Zeng CQ, Hu SN, Yu J (2006) The study of neighboring nucleotide composition and transition/transversion bias.

Science in China Series C-Lifer Sciences 49(4):395-402.

2005

95.    Zhao H , Li Q, Zeng CQ, Yang HM, Yu J. (2005) Neighboring-nucleotide effects on the mutation patterns of the rice genome.

Genomics, Proteomics & Bioinformatics3(3):158-168.

 

Book Chapter

1.          Zheng G, Yuan A, Li Q, Gastwirth JL. (2017)  Chapter 18. Single marker association analysis for unrelated samples.

Statistical Human Genetics, Page 375-389, 2nd edition.

2.          Zang Y, Zhang Q, Zhang S, Li Q, Ma S (2017) Empirical likelihood test for high dimensional generalized linear models. Big and Complex Data Analysis: Statistical Methodologies and Applications, 29-50, Springer.

3.          Li Q, Qin H, Li Z, Zheng G (2015) Statistical methods for design and analysis of linkage studies.

Advanced Medical Statistics Page 889-913, Edited by Lu Y, Fang J, Lu T, Jin H.

4.          Zhang H, Li Q, Zang Y, Yang Y, Zheng G (2009). Centralized genomic control: A simple approach correcting for population structures in case-control association studies.

Methods and Applications of Sciences in the Life and Health Sciences (Ed. N. Balakrishnan), 81-93, Wiley: Hoboken, NJ.

时间:2015-10-27  来源: 文本大小:【 |  | 】  【打印
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